Design piRNAi fragments

Target C. elegans and C. briggsae genes



Select individual synthetic guide piRNAs




Bed tracks with C. elegans (WS270) guide-piRNAs for each specifity criteria.

Download (307 MB)


Name Lab GenBank file (ApE annotations)
ce-GFP Froekjaer-Jensen lab
ce-tagRFP Froekjaer-Jensen lab
GFP Fire lab gfp(S65C).gb
mCherry Oegema lab mCherry(Oegema).gb
mCherry Seydoux lab mCherry(Seydoux).gb
mKate2 Dickinson lab
mNeonGreen Dickinson lab

The piRNA-based RNA interference app ("piRNAi")

This website was generated via custom modified css/html code running in R via the shiny library.
All the templates, libraries, and programs used to produce this site are under the MIT and GNU licenses.
While the rationale behind the app is described in the background section, its implementation can be found at Amhed Missael Vargas Velazquez | Github account

The Laboratory of Synthetic Genome Biology

The Laboratory of Synthetic Genome Biology is located in building 2 - level 3 (Ibn Al-Haytham – Above Spine) at King Abdullah University of Science and Technology (KAUST).
Contact info:
Christian-Froekjaer Jensen, Ph.D.
Assistant Professor of Bioscience
Laboratory of Synthetic Genome Biology

Contact us!