Design piRNAi fragments

Target C. elegans and C. briggsae genes





                  

                  

Select individual synthetic guide piRNAs







                      

                  




Tracks


Bed tracks with C. elegans (WS270) guide-piRNAs for each specifity criteria.

Download (307 MB)

Sequences

Name Lab GenBank file (ApE annotations)
ce-GFP Froekjaer-Jensen lab ce-gfp.gb
ce-tagRFP Froekjaer-Jensen lab ce-tagRFP-T.gb
GFP Fire lab gfp(S65C).gb
mCherry Oegema lab mCherry(Oegema).gb
mCherry Seydoux lab mCherry(Seydoux).gb
mKate2 Dickinson lab mKate2.gb
mNeonGreen Dickinson lab mNeonGreen.gb

The piRNA-based RNA interference app ("piRNAi")

This website was generated via custom modified css/html code running in R via the shiny library.
All the templates, libraries, and programs used to produce this site are under the MIT and GNU licenses.
While the rationale behind the app is described in the background section, its implementation can be found at Amhed Missael Vargas Velazquez | Github account

The Laboratory of Synthetic Genome Biology

The Laboratory of Synthetic Genome Biology is located in building 2 - level 3 (Ibn Al-Haytham – Above Spine) at King Abdullah University of Science and Technology (KAUST).
Contact info:
Christian-Froekjaer Jensen, Ph.D.
Assistant Professor of Bioscience
Laboratory of Synthetic Genome Biology
Email: cfjensen@kaust.edu.sa


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